Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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πŸ“ƒ Demystifying the black box: A survey on explainable artificial intelligence (XAI) in bioinformatics

πŸ“• Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
πŸ—“ Publish year: 2025

πŸ§‘β€πŸ’»Authors: Aishwarya Budhkar, Qianqian Song, Jing Su, ...
🏒Universities: Indiana University Bloomington - University of Florida - Indiana University, USA

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πŸ“²Channel: @Bioinformatics
#review #explainability #ai
πŸ“˜ ABI Bioinformatics Guide
πŸ’₯ Free online book by Armenian Bioinformatics Institute, 2024

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πŸ“²Channel: @Bioinformatics
#book
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πŸ“„ Deep Generative Models for Therapeutic Peptide Discovery: A Comprehensive Review

πŸ“— Journal: ACM Computing Surveys (πŸ”₯I.F.=23.8)
πŸ—“ Publish year: 2025

πŸ§‘β€πŸ’»Authors: Leshan Lai, Yuansheng Liu, Bosheng Song, ...
🏒Universities: Hunan University, China - State University of New York, USA

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πŸ“²Channel: @Bioinformatics
#review #llm #peptide #therapeutic
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πŸ“½ Gene expression – An introduction and hands on experience on data analysis

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πŸ“²Channel: @Bioinformatics
#video #gene_expression
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πŸ“ƒ Perspectives on Computational Enzyme Modeling: From Mechanisms to Design and Drug Development

πŸ“” Journal: ACS Omega (I.F.=3.7)
πŸ—“ Publish year: 2024

πŸ§‘β€πŸ’»Authors: Kwangho Nam, Yihan ShaoDan, T. Major, ...
🏒Universities:
University of Texas at Arlington-University of Oklahoma, USA
UmeΓ₯ University, Swedn

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πŸ“²Channel: @Bioinformatics
#review #enzyme #drug
πŸ“‘ Quantifying transcriptome diversity: a review

πŸ““ Journal: Briefings in Functional Genomics (I.F.=2.5)
πŸ—“ Publish year: 2024

πŸ§‘β€πŸ’»Authors: Emma F Jones, Anisha Haldar, Vishal H Oza, ...
🏒Universities: The University of Alabama at Birmingham, USA

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πŸ“²Channel: @Bioinformatics
#review #transcriptome
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πŸ“‘ Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper

πŸ“• Journal: PLOS Computational Biology (I.F.=3.8)
πŸ—“ Publish year: 2025

πŸ§‘β€πŸ’»Authors: Faye Orcales ,Lucy Moctezuma Tan ,Meris Johnson-Hagler, ...
🏒Universities: University of California San Francisco - San Francisco State University, USA

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#tutorial #genomic #antibiotic
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πŸ“„Comprehensive Evaluation of Multi-Omics Clustering Algorithms for Cancer Molecular Subtyping

πŸ“˜ Journal: International Journal of Molecular Sciences (I.F.=4.9)
πŸ—“ Publish year: 2025

πŸ§‘β€πŸ’»Authors: Juan Wang,Lingxiao Wang,Yi Liu, ...

🏒Universities: Anhui Medical University-Beijing Institute of Lifeomics, China

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πŸ“²Channel: @Bioinformatics
#review #omics #clustering #cancer #subtyping
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πŸ“ƒMolecule generation for drug design: A graph learning perspective

πŸ“— Journal: Fundamental Research (I.F.=5.7)
πŸ—“ Publish year: 2024

πŸ§‘β€πŸ’»Authors: Nianzu Yang, Huaijin Wu, Kaipeng Zeng, ...

🏒Universities: Shanghai Jiao Tong University, China

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#review #molecule #drug #graph
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πŸ“‘Machine learning and related approaches in transcriptomics

πŸ“™ Journal: Biochemical and Biophysical Research Communications (I.F.=2.5)
πŸ—“ Publish year: 2024

πŸ§‘β€πŸ’»Authors: Yuning Cheng, Si-Mei Xu, Kristina Santucci, ...

🏒Universities: University of New South Wales, Australia

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πŸ“²Channel: @Bioinformatics
#review #machine_learning #transcriptomics
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πŸ‘¨β€πŸ’» Faculty Member (Bioinformatics)
πŸ“ Bioengineering Department - KFUPM
πŸ‡ΈπŸ‡¦Dhahran, Eastern, Saudi Arabia

πŸ’₯King Fahd University of Petroleum & Minerals (KFUPM) invites applications for Assistant/Associate/Full Professor positions in the field of Bioinformatics. We seek outstanding candidates with a strong background in Biology and Computer Science to join our dynamic and interdisciplinary faculty team.

βœ…Responsibilities:
- Conduct cutting-edge research in bioinformatics and related areas.
- Teach undergraduate and graduate courses in bioinformatics, biology, and computer science.
- Mentor students and contribute to curriculum development.
- Secure research funding and engage in collaborative projects.


βœ… Qualifications:
- Ph.D. in Bioinformatics, Bioengineering, Biology, Computer Science, or a closely related field.
- Strong publication record and research achievements.
- Proven teaching experience and mentorship experience for associate and full professor candidates.
- Experience in interdisciplinary collaboration is a plus.
- Preference is given to the following area of expertise: Bioinformatics, Biomarkers Discovery, Biologics Design, Personalized Medicine, A.I in Medicine. Candidates with background and/or degree in biology. And background and/or in computer science

πŸ“§ Please send your CV and a cover letter\email expressing your interest, to:
Dr. Yaqub Mahnashi, Bioengineering Chairman at Email: [email protected]
Dr. Ahmed S. Dalaq, Assistant Professor, at Email: [email protected]

✍️ Potential applicants will be contacted if more documents are needed for screening.

πŸ“²Channel
: @Bioinformatics
#job #faculty_position #saudi_arabia
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πŸ“„ New methods for drug synergy prediction: A mini-review

πŸ“• Journal: Current Opinion in Structural Biology (I.F.=6.1)
πŸ—“ Publish year: 2024

πŸ§‘β€πŸ’»
Authors: Fatemeh Abbasi, Juho Rousu
🏒Universities: University of Tehran, Iran - Aalto University, Finland

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πŸ“²Channel: @Bioinformatics
#review #drug
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πŸ“š R Learning Resources for Genomics
πŸ’₯ GitBook website

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πŸ“²Channel: @Bioinformatics
#github #genomics #r #book
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