π A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data
π Journal: Briefings in Bioinformatics (I.F.=9.5)
π Publish year: 2021
π§βπ»Authors: Hung Nguyen, Duc Tran, Bang Tran, Bahadir Pehlivan, Tin Nguyen
π’Universities: Department of Computer Science and Engineering, University of Nevada, USA
π Study the paper
π²Channel: @Bioinformatics
#review #grn #single_cell
π Journal: Briefings in Bioinformatics (I.F.=9.5)
π Publish year: 2021
π§βπ»Authors: Hung Nguyen, Duc Tran, Bang Tran, Bahadir Pehlivan, Tin Nguyen
π’Universities: Department of Computer Science and Engineering, University of Nevada, USA
π Study the paper
π²Channel: @Bioinformatics
#review #grn #single_cell
π4
π Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
πJournal: Genomics, Proteomics and Bioinformatics (I.F.= 9.5)
π Publish year: 2022
π§βπ»Authors: Matthew Brendel, Chang Su, Zilong Bai, ...
π’University: Cornell University - Temple University, USA
π Study the paper
π²Channel: @Bioinformatics
#review #deep_learning #single_cell #rna
πJournal: Genomics, Proteomics and Bioinformatics (I.F.= 9.5)
π Publish year: 2022
π§βπ»Authors: Matthew Brendel, Chang Su, Zilong Bai, ...
π’University: Cornell University - Temple University, USA
π Study the paper
π²Channel: @Bioinformatics
#review #deep_learning #single_cell #rna
π8β€3π1π―1
π Single-Cell Analysis in the Omics Era: Technologies and Applications in Cancer
πJournal: Genes (I.F.=3.5)
πPublish year: 2023
π§βπ»Authors: Michele Massimino,Federica Martorana,Stefania Stella, ...
π’University: University of Catania - University Oncology Department, Italy
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell
πJournal: Genes (I.F.=3.5)
πPublish year: 2023
π§βπ»Authors: Michele Massimino,Federica Martorana,Stefania Stella, ...
π’University: University of Catania - University Oncology Department, Italy
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell
π4
π₯ A Deeper Dive into Single-Cell RNA Sequencing Foundation Models
π Watch
π²Channel: @Bioinformatics
#video #single_cell
π Watch
π²Channel: @Bioinformatics
#video #single_cell
YouTube
Rebecca Boiarsky - A Deeper Dive into Single Cell RNA Sequencing Foundation Models
π1
π Interpretable deep learning in single-cell omics
πPublish year: 2024
π§βπ»Authors: Manoj M Wagle, Siqu Long, Carissa Chen, ...
π’University: The University of Sydney, Australia
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π²Channel: @Bioinformatics
#review #deep_learning #single_cell
πPublish year: 2024
π§βπ»Authors: Manoj M Wagle, Siqu Long, Carissa Chen, ...
π’University: The University of Sydney, Australia
π Study the paper
π²Channel: @Bioinformatics
#review #deep_learning #single_cell
β€2π1π1
π A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-Seq, and Single-Cell RNA-Seq
πJournal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
πPublish year: 2022
π§βπ»Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
π’University: Soochow University - Xiamen University, China
π Study the paper
π²Channel: @Bioinformatics
#review #Polyadenylation #RNA_Seq #Single_Cell
πJournal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
πPublish year: 2022
π§βπ»Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
π’University: Soochow University - Xiamen University, China
π Study the paper
π²Channel: @Bioinformatics
#review #Polyadenylation #RNA_Seq #Single_Cell
π5β€4π1
π A review of the current state of single-cell proteomics and future perspective
πJournal: Analytical and Bioanalytical Chemistry (I.F.=4.3)
πPublish year: 2023
π§βπ»Authors: Rushdy Ahmad & Bogdan Budnik
π’University: Harvard University, USA
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #proteomics
πJournal: Analytical and Bioanalytical Chemistry (I.F.=4.3)
πPublish year: 2023
π§βπ»Authors: Rushdy Ahmad & Bogdan Budnik
π’University: Harvard University, USA
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #proteomics
πDeep learning applications in single-cell genomics and transcriptomics data analysis
πJournal: Biomedicine & Pharmacotherapy (I.F.=6.9)
πPublish year: 2023
π§βπ»Authors: Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz,...
π’University: Birjand University of Medical Sciences, Iran - University of California, Merced, USA - University of Calgary, Calgary, Canada, ...
π Study the paper
π²Channel: @Bioinformatics
#review #deep_learning #single_cell #genomics #transcriptomics
πJournal: Biomedicine & Pharmacotherapy (I.F.=6.9)
πPublish year: 2023
π§βπ»Authors: Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz,...
π’University: Birjand University of Medical Sciences, Iran - University of California, Merced, USA - University of Calgary, Calgary, Canada, ...
π Study the paper
π²Channel: @Bioinformatics
#review #deep_learning #single_cell #genomics #transcriptomics
π6β€2π1
π Single-cell classification, analysis, and its application using deep learning techniques
πJournal: BioSystems (I.F.=2)
πPublish year: 2024
π§βπ»Authors: R. Premkumar, Arthi Srinivasan, K.G. Harini Devi,...
π’University: Rajalakshmi Engineering College, Chennai, India - University Malaysia Pahang (UMP), Malaysia - Malaysia, ...
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #deep_learning
πJournal: BioSystems (I.F.=2)
πPublish year: 2024
π§βπ»Authors: R. Premkumar, Arthi Srinivasan, K.G. Harini Devi,...
π’University: Rajalakshmi Engineering College, Chennai, India - University Malaysia Pahang (UMP), Malaysia - Malaysia, ...
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #deep_learning
β€6π4
π Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
π₯Book chapter from Springer
π Study
π²Channel: @Bioinformatics
#bookchapter #single_cell #rna_seq
π₯Book chapter from Springer
π Study
π²Channel: @Bioinformatics
#bookchapter #single_cell #rna_seq
π8β€4π₯3π2
π Introduction to Single Cell Genomics
π₯From Minnesota Supercomputing Institute
π½ Watch
π²Channel: @Bioinformatics
#video #single_cell #genomics
π₯From Minnesota Supercomputing Institute
π½ Watch
π²Channel: @Bioinformatics
#video #single_cell #genomics
YouTube
Intro to Single Cell Genomics Oct 2024
Topic: Intro to Single Cell Genomics
Presented by: RI Bioinformatics
Date: Oct 22 2024
Learn more at https://www.msi.umn.edu
Presented by: RI Bioinformatics
Date: Oct 22 2024
Learn more at https://www.msi.umn.edu
β€11π1
π Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single-cell RNA sequencing analyses
π Journal: Quantitative Biology (I.F.=0.6)
πPublish year: 2025
π§βπ»Authors: Jorge A. Tzec-InteriΓ‘n, Daianna GonzΓ‘lez-Padilla, Elsa B. GΓ³ngora-Castillo
π’Universities: Yucatan Scientific Research Center, Mexico
π Study the paper
π²Channel: @Bioinformatics
#review #transcriptomics #rna #single_cell
π Journal: Quantitative Biology (I.F.=0.6)
πPublish year: 2025
π§βπ»Authors: Jorge A. Tzec-InteriΓ‘n, Daianna GonzΓ‘lez-Padilla, Elsa B. GΓ³ngora-Castillo
π’Universities: Yucatan Scientific Research Center, Mexico
π Study the paper
π²Channel: @Bioinformatics
#review #transcriptomics #rna #single_cell
β€4π2
πΉ Single Cell RNA-Seq Analysis in R
π Watch
π²Channel: @Bioinformatics
#video #rna_seq #single_cell
π Watch
π²Channel: @Bioinformatics
#video #rna_seq #single_cell
YouTube
Single Cell RNA-Seq Analysis in R With Seurat|ScRNA-seq Analysis Seurat|Bioinformatics for Beginners
Single-cell RNA sequencing (scRNA-seq) analysis in R using Seurat is a powerful method for studying gene expression at the individual cell level, enabling researchers to explore cellular heterogeneity and identify distinct cell populations.
In this bioinformaticsβ¦
In this bioinformaticsβ¦
β€8π3π1
πA Systematic Overview of Single-Cell Transcriptomics Databases, their Use cases, and Limitations
π Publish year: 2024
π§βπ»Authors: Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, ...
π’Universities: University of Michigan - University of Illinois Business College, USA
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #transcriptomics
π Publish year: 2024
π§βπ»Authors: Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, ...
π’Universities: University of Michigan - University of Illinois Business College, USA
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #transcriptomics
π4β€2π1
π Biological Multi-Layer and Single Cell Network-Based Multiomics Models - a Review
π Publish year: 2025
π§βπ»Authors: Marcello Barylli, Joyaditya Saha, Tineke E. Buffart , ...
π’Universities: University of Amsterdam - Amsterdam University Medical Centers - Oncode Institute, Netherlands
π Study the paper
π²Channel: @Bioinformatics
#review #multiomics #network #multi_layer #single_cell
π Publish year: 2025
π§βπ»Authors: Marcello Barylli, Joyaditya Saha, Tineke E. Buffart , ...
π’Universities: University of Amsterdam - Amsterdam University Medical Centers - Oncode Institute, Netherlands
π Study the paper
π²Channel: @Bioinformatics
#review #multiomics #network #multi_layer #single_cell
π2
πGraph neural networks for single-cell omics data: a review of approaches and applications
π Journal: Briefings in Bioinformatics (I.F.=6.8)
π Publish year: 2025
π§βπ»Authors: Sijie Li, Heyang Hua, Shengquan Chen
π’Universities: Nankai University, China
π Study the paper
π²Channel: @Bioinformatics
#review #gnn #single_cell #omic
π Journal: Briefings in Bioinformatics (I.F.=6.8)
π Publish year: 2025
π§βπ»Authors: Sijie Li, Heyang Hua, Shengquan Chen
π’Universities: Nankai University, China
π Study the paper
π²Channel: @Bioinformatics
#review #gnn #single_cell #omic
π4π1
πΉ Single-Cell Analysis without coding!
π Watch
π²Channel: @Bioinformatics
#video #single_cell #drug
π Watch
π²Channel: @Bioinformatics
#video #single_cell #drug
π Mapping Cell Atlases at the Single-Cell Level
π Journal: Advanced Science (I.F.=14.1)
πPublish year: 2025
π§βπ»Authors: Fang Ye, Jingjing Wang, Jiaqi Li, , ...
π’Universities: Zhejiang University School of Medicine & ZhejiangUniversity, China
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #cell #atlas
π Journal: Advanced Science (I.F.=14.1)
πPublish year: 2025
π§βπ»Authors: Fang Ye, Jingjing Wang, Jiaqi Li, , ...
π’Universities: Zhejiang University School of Medicine & ZhejiangUniversity, China
π Study the paper
π²Channel: @Bioinformatics
#review #single_cell #cell #atlas
π4β€2
πMethods for reconstructing gene regulatory networks from single-cell transcriptomic data
π Journal: ΠΠ°Π²ΠΈΠ»ΠΎΠ²ΡΠΊΠΈΠΉ ΠΆΡΡΠ½Π°Π» Π³Π΅Π½Π΅ΡΠΈΠΊΠΈ ΠΈ ΡΠ΅Π»Π΅ΠΊΡ (Systems Computational Biology) - [I.F.=0.8]
πPublish year: 2024
π§βπ»Authors: M. A. Rybakov , N. A. Omelyanchuk , E. V. Zemlyanskaya
π’University: Novosibirsk State University, Russia
π Study the paper
π²Channel: @Bioinformatics
#review #gene #grn #single_cell
π Journal: ΠΠ°Π²ΠΈΠ»ΠΎΠ²ΡΠΊΠΈΠΉ ΠΆΡΡΠ½Π°Π» Π³Π΅Π½Π΅ΡΠΈΠΊΠΈ ΠΈ ΡΠ΅Π»Π΅ΠΊΡ (Systems Computational Biology) - [I.F.=0.8]
πPublish year: 2024
π§βπ»Authors: M. A. Rybakov , N. A. Omelyanchuk , E. V. Zemlyanskaya
π’University: Novosibirsk State University, Russia
π Study the paper
π²Channel: @Bioinformatics
#review #gene #grn #single_cell
π4