Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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πŸ“‘ Federated learning frameworks: quality and interoperability for biomedical research

πŸ“™ Journal: NAR Genomics and Bioinformatics (I.F.=2.8)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: MarΓ­a Chavero-Diez, Carles Hernandez-Ferrer, Laia CodΓ³, ...
🏒Universities: Barcelona Supercomputing Center (BSC) & University of Barcelona, Spain

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πŸ“²Channel: @Bioinformatics
#review #federated_learning
πŸ‘2
πŸ“ƒ Systematic review of transformers, graph neural networks, and federated learning in oncology: Applications, challenges, and pathways to clinical translation

Journal: Informatics in Medicine Unlocked
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Sasan Shafiei, Atousa Saleknezhad, Erfan Hashemi , ...
🏒Universities: Shiraz University of Medical Sciences & Babol University of Medical Sciences & Tehran University of Medical Sciences & Jahrom University of Medical Sciences, Iran

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πŸ“²Channel: @Bioinformatics
#review #transformers #oncology #deep_learning
πŸ‘1
πŸ“‘ Artificial Intelligence to Guide Repurposing of Drugs

πŸ““ Journal: Annual Review of Medicine (πŸ”₯I.F.=22.1)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Zhimin Fu, Yuxin Yang, Mina K. Chung, ...
🏒Universities: University Hospitals of Cleveland, Cleveland & Case Western Reserve University & Lerner Research Institute, USA

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πŸ“²Channel: @Bioinformatics
#review #repurposing #drug
πŸ‘3❀1
πŸ“ƒ Cognition, Cytokines, Blood–Brain Barrier, and Beyond in COVID-19: A Narrative Review

πŸ“•Journal: International Journal of Molecular Sciences (I.F.=4.9)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ana Barajas, Gemma Riquelme-Alacid, AmΓ©rica Vera-Montecinos, and BelΓ©n Ramos
🏒Universities: Universitat Autònoma de Barcelona & Institut de Recerca Sant Joan de Déu, Spain - Universidad San SebastiÑn, Chile

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πŸ“²Channel: @Bioinformatics
#review #covid_19 #Cognition #Cytokines
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πŸ“‘ A Survey on Multimodal AI and Agent Systems for Biology: Perception, Reasoning, Generation, and Automation

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Emily Johnson, Zihan Dong
🏒University: University of Massachusetts Amherst, USA

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πŸ“²Channel: @Bioinformatics
#review #ai #multimodal
πŸ‘4
πŸ“„ AI-Based Prediction of Gene Expression in Single-Cell and Multiscale Genomics and Transcriptomics

πŸ“— Journal:International Journal of Molecular Sciences (I.F.=4.9)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ema Andreea PΔƒlΔƒΘ™tea, Irina-Mihaela Matache,Eugen Radu, ...
🏒Universities: Genomics Research and Development Institute & Carol Davila University of Medicine and Pharmacy & Emergency University Hospital, Romania - Yale School of Medicine & Viron Molecular Medicine Institute, USA

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πŸ“²Channel: @Bioinformatics
#review #ai #gene_expression #single_cell
πŸ‘3
πŸ“‘ A Survey on Efficient Protein Language Models

πŸ—“Publish year: 2025

πŸ§‘β€πŸ’»Authors: Shouren Wang, Debargha Ganguly, Vinooth Kulkarni, ...
🏒University: Case Western Reserve University, Cleveland Clinic, USA

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πŸ“²Channel: @Bioinformatics
#review #ai #llm #protein
πŸ‘4❀2
πŸ“ƒ Gene regulatory networks: from correlative models to causal explanations

πŸ“˜ Journal: Nature Reviews Genetics (I.F.=⚑️52)

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Rory J. Maizels & James Briscoe
🏒 University: The Francis Crick Institute, London, UK

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πŸ“²Channel: @Bioinformatics
#review #grn #gene #regulatory
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🌍 Registration is open for the One-Month Comprehensive International Bioinformatics Workshop by Decode Life

πŸ’₯ Generative AI for Bioinformatics - with Python πŸ’₯

πŸ“… Duration: 14 March - 9 April 2026
πŸ’² Fees: β‚Ή1300 for Indian Participants / $30 for International Participants

πŸ”— Registration Link:

https://decodelife.co.in/

✨ Key Features:
βœ… 21 sessions with approximately 35 hours of learning
βœ… E-Certificate of Participation
βœ… Video recordings and relevant material shared after each session

❔ FAQs: https://decodelife.co.in/faq/

πŸ“²Channel: @Bioinformatics
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πŸ“„ Network pharmacology in the multi-omics era: uncovering novel therapeutic strategies

πŸ“• Journal: Discover Chemistry (I.F.=4.6)
πŸ—“ Publish year: 2026

πŸ§‘β€πŸ’»Authors: Kalyani Ramprasad Thombre, Vaishnavi Gabhane, Krishna Radheshyam Gupta, ...
🏒University: Kishoritai Bhoyar College of Pharmacy, India

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πŸ—― Article summary:
Network pharmacology represents a transformative approach in drug discovery, moving away from the traditional "one-drug, one-target" model to a systems-oriented framework that acknowledges the complexity of diseases through the integration of multi-omics data and computational methodologies. This review synthesizes current advancements in network pharmacology, highlighting its potential to enhance drug repurposing, precision medicine, and multi-target therapeutic strategies while addressing challenges related to data quality, methodological biases, and the need for rigorous experimental validation.

⚑️Channel: @ComplexNetworkAnalysis
#review #pharmacology #omics
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πŸ“‘ Leveraging Natural Language Processing to Unravel the Mystery of Life: A Review of NLP Approaches in Genomics, Transcriptomics, and Proteomics

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ella Rannon, David Burstein
🏒 University: Tel-Aviv University, Israel

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πŸ“²Channel: @Bioinformatics
#review #nlp
πŸ”₯4
πŸ“ƒ Blood proteomics: insights from public data

πŸ““ Journal: Genome Biology (I.F.=9.4)

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Asier Larrea-Sebal, Chengxin Dai, Alejandro J. Brenes, ...

🏒 Universities: European Bioinformatics Institute (EMBL-EBI) & University of Edinburgh, UK &
Max Planck Institute of Biochemistry, Germany & University of Melbourne, Australia & ...


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πŸ“²Channel: @Bioinformatics
#review #blood #proteomics
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πŸ“ƒ ProteomeXchange Consortium in 2026: Making Proteomics Data Accessible

πŸ“’ Journal: Nucleic Acids Research (I.F.= 13.1)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Eric W. Deutsch,Nuno Bandeira , Yasset Perez-Riverol , et al.
🏒 Universities: University of Washington, USA & EMBL-EBI, UK & Swiss Institute of Bioinformatics, Switzerland & ...

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πŸ“²Channel: @Bioinformatics
#review #dataset #proteomics
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πŸ“„ LLM-Powered Bioinformatics Chatbot for Proteogenomics

πŸ““ Journal: Nature Communications (I.F.=15.7)
πŸ—“Publish year: 2025

πŸ§‘β€πŸ’»Authors: Wei Liu, Jun Li, Yitao Tang, et al.
🏒 Universities: The University of Texas MD Anderson Cancer Center & Baylor College of
Medicine & Brown University & Oregon Health & Science University, USA & ...

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πŸ€– Chatbot:
https://drbioright.org

πŸ“²Channel: @Bioinformatics
#llm #chatgpt #chatbot #proteogenomics
πŸ‘5❀1
πŸ“ƒ Artificial Intelligence agents for biological research: a survey

πŸ“— Journal: Briefings in Bioinformatics (I.F.= 7.7)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Cong Qi , Wenbo Wang , Siqi Jiang , et al.
🏒 Universities: , New Jersey Institute of Technology & Hamilton College, USA

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πŸ“¦ Github

πŸ“²Channel: @Bioinformatics
#review #ai #artificial_intelligence #agents
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πŸ“‘ Genomic sequence data sharing for clinical practice: A scoping review

πŸ“˜ Journal: Computers in Biology and Medicine (I.F.=7.7)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Elias Crum, Ruben Taelman, Bart Buelens, GΓΆkhan Ertaylan
🏒 Universites: Flemish Institute for Technological Research (VITO) & Ghent University, Belgium

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πŸ“²Channel: @Bioinformatics
#review #genomic #DataScience
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πŸ“ƒ A survey of contrastive learning methods in molecular representation

πŸ“• Journal: Briefings in Bioinformatics (I.F.= 7.7)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ali Forooghi , Shaghayegh Sadeghi , Luis Rueda , Alioune Ngom
🏒 University: University of Windsor, Canada

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πŸ“²Channel: @Bioinformatics
#review #contrastive_learning #molecular