Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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πŸ“‘ Applications of large-scale artificial intelligence models in bioinformatics

πŸ“• Journal: Quantitative Biology (I.F.=1.4)
πŸ—“Publish year: 2025

πŸ§‘β€πŸ’»Authors: Mingjing Li, Qichen Shang, Ziyang Dong, ...
🏒University: SichuanUniversity, China

πŸ“Ž Study the paper

πŸ“²Channel: @Bioinformatics
#review #ai #llm
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πŸ“ƒ AI-driven multi-omics integration in precision oncology: bridging the data deluge to clinical decisions

πŸ““ Journal: Clinical and Experimental Medicine (I.F.=3.5)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Chou-Yi Hsu, Shavan Askar, Samer Saleem Alshkarchy, ...
🏒University: Chia Nan University of Pharmacy and Science, Taiwan - Erbil Polytechnic University & Al-Qasim Green University & The Islamic University, Iraq - Siksha β€˜O’ Anusandhan (Deemed to Be University), India

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πŸ“²Channel: @Bioinformatics
#review #ai #omics #oncology
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πŸ“‘ A comprehensive systematic literature review of multiple sequence alignment algorithms

πŸ“•Journal: Discover Computing
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Jeneffer Sabonsolin & Demelo Lao
🏒Universities: FEU Institute of Technology & University of the Philippines Cebu, Philippines

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πŸ“²Channel: @Bioinformatics
#review #sequence_alignment
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πŸ“„ Harnessing Artificial Intelligence for Genomic Variant Prediction: Advances, Challenges, and Future Directions

πŸ“— Journal: GigaScience
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Indah Pakpahan, Mentari Sihombing, Haohan Liu,...
🏒Universities: Dalian University of Technology, China - The University of New South Wales, Australia

πŸ“Ž Study the paper

πŸ“²Channel: @Bioinformatics
#review #variant #genomic #ai
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πŸ“ƒFoundation Models in Omics Research: A Comprehensive Survey

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Haozhe Liu, Wenhao Cai, Yizheng Sun
🏒University: The University of Manchester, United Kingdom

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πŸ“²Channel: @Bioinformatics
#review #llm #foundation_model #omics #ai
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πŸ“„ Learnable protein representations in computational biology for predicting drug-target affinity

πŸ“” Journal: Journal of Cheminformatics (I.F.=5.7)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Rachit Kumar, Joseph Romano & Marylyn Ritchie
🏒Universities: University of Pennsylvania & Medical University of South Carolina, USA

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πŸ“²Channel: @Bioinformatics
#review #drug #target #protein #representation
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πŸ“ƒNavigating the Computational Landscape for Drug Repurposing

πŸ“˜ Journal: Annual Review of Pharmacology and Toxicology (I.F.=13.1)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Andrea Álvarez-PΓ©rez, LucΓ­a Prieto-SantamarΓ­a, Ana I. Casas,...
🏒University: Universidad Politécnica de Madrid, Spain - Maastricht University, The Netherlands - University Clinic Essen, Germany - Harvard Medical School, USA

πŸ“Ž Study the paper

πŸ“²Channel: @Bioinformatics
#review #drug #repurposing
πŸ‘4
πŸš€ AI-Powered Single-Cell RNA-seq β€” 7-Minute Runtime Report

How can AI streamline end-to-end single-cell RNA analysis?
In this session, we demonstrate how Drylab enables:

πŸ”¬ End-to-end single-cell RNA workflow
β€’ Data preprocessing
β€’ Advanced analysis
β€’ Automated reporting

πŸ’¬ Natural-language chat to explore and interpret results

πŸ’» Full code environment for transparency

πŸ“Š Clear, reproducible outputs ready for review and sharing

πŸ“– Read the full case study:
https://thedrylab.com/use-case/comprehensive-multi-organ-endothelial-cell-atlas-analysis-and-liver-specific

πŸ§ͺ Explore the full chat + code environment:
https://app.thedrylab.com/share/wLRjnJxzWVYz

πŸ“²Channel: @Bioinformatics
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πŸ“‘ Federated learning frameworks: quality and interoperability for biomedical research

πŸ“™ Journal: NAR Genomics and Bioinformatics (I.F.=2.8)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: MarΓ­a Chavero-Diez, Carles Hernandez-Ferrer, Laia CodΓ³, ...
🏒Universities: Barcelona Supercomputing Center (BSC) & University of Barcelona, Spain

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πŸ“²Channel: @Bioinformatics
#review #federated_learning
πŸ‘2
πŸ“ƒ Systematic review of transformers, graph neural networks, and federated learning in oncology: Applications, challenges, and pathways to clinical translation

Journal: Informatics in Medicine Unlocked
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Sasan Shafiei, Atousa Saleknezhad, Erfan Hashemi , ...
🏒Universities: Shiraz University of Medical Sciences & Babol University of Medical Sciences & Tehran University of Medical Sciences & Jahrom University of Medical Sciences, Iran

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πŸ“²Channel: @Bioinformatics
#review #transformers #oncology #deep_learning
πŸ‘1
πŸ“‘ Artificial Intelligence to Guide Repurposing of Drugs

πŸ““ Journal: Annual Review of Medicine (πŸ”₯I.F.=22.1)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Zhimin Fu, Yuxin Yang, Mina K. Chung, ...
🏒Universities: University Hospitals of Cleveland, Cleveland & Case Western Reserve University & Lerner Research Institute, USA

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πŸ“²Channel: @Bioinformatics
#review #repurposing #drug
πŸ‘3❀1
πŸ“ƒ Cognition, Cytokines, Blood–Brain Barrier, and Beyond in COVID-19: A Narrative Review

πŸ“•Journal: International Journal of Molecular Sciences (I.F.=4.9)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ana Barajas, Gemma Riquelme-Alacid, AmΓ©rica Vera-Montecinos, and BelΓ©n Ramos
🏒Universities: Universitat Autònoma de Barcelona & Institut de Recerca Sant Joan de Déu, Spain - Universidad San SebastiÑn, Chile

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πŸ“²Channel: @Bioinformatics
#review #covid_19 #Cognition #Cytokines
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πŸ“‘ A Survey on Multimodal AI and Agent Systems for Biology: Perception, Reasoning, Generation, and Automation

πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Emily Johnson, Zihan Dong
🏒University: University of Massachusetts Amherst, USA

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πŸ“²Channel: @Bioinformatics
#review #ai #multimodal
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πŸ“„ AI-Based Prediction of Gene Expression in Single-Cell and Multiscale Genomics and Transcriptomics

πŸ“— Journal:International Journal of Molecular Sciences (I.F.=4.9)
πŸ—“Publish year: 2026

πŸ§‘β€πŸ’»Authors: Ema Andreea PΔƒlΔƒΘ™tea, Irina-Mihaela Matache,Eugen Radu, ...
🏒Universities: Genomics Research and Development Institute & Carol Davila University of Medicine and Pharmacy & Emergency University Hospital, Romania - Yale School of Medicine & Viron Molecular Medicine Institute, USA

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πŸ“²Channel: @Bioinformatics
#review #ai #gene_expression #single_cell
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πŸ“‘ A Survey on Efficient Protein Language Models

πŸ—“Publish year: 2025

πŸ§‘β€πŸ’»Authors: Shouren Wang, Debargha Ganguly, Vinooth Kulkarni, ...
🏒University: Case Western Reserve University, Cleveland Clinic, USA

πŸ“Ž Study the paper

πŸ“²Channel: @Bioinformatics
#review #ai #llm #protein
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